Developmental Lung Cell Atlas
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| Name | Year | Title | Accession | Seq-method | Species | Donor status | Region | Download |
|---|---|---|---|---|---|---|---|---|
| Chen et al. | 2020 | Single-cell transcriptomics reveals regulators underlying immune cell diversity and immune subtypes associated with prognosis in nasopharyngeal carcinom | GSE150430 | scRNA-seq | Homo sapiens | nasopharyngeal carcinom | Nasopharynx | Link |
| Gong et al. | 2021 | Comprehensive single-cell sequencing reveals the stromal dynamics and tumor-specific characteristics in the microenvironment of nasopharyngeal carcinoma | GSE150825 | scRNA-seq | Homo sapiens | nasopharyngeal carcinom | Nasopharynx | Link |
| Song et al. | 2020 | Cellular heterogeneity landscape in laryngeal squamous cell carcinoma | GSE150321 | scRNA-seq | Homo sapiens | laryngeal squamous cell carcinoma | Larynx | Link |
| Song et al. | 2020 | Cellular heterogeneity landscape in laryngeal squamous cell carcinoma | GSE150321 | scRNA-seq | Homo sapiens | laryngeal squamous cell carcinoma | Larynx | Link |
| Boyd et al. | 2021 | Exuberant fibroblast activity compromises lung function via ADAMTS4 | PRJNA612345 | scRNA-seq | Mus musculus | acute respiratory distress syndrome | Lung | Link |
| Goldfarbmuren et al. | 2020 | Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium | GSE134174 | scRNA-seq | Homo sapiens | Healthy | Tracheal epithelium | Link |
| Murthy et al. | 2022 | Human distal lung maps and lineage hierarchies reveal a bipotent progenitor | GSE178360 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Murthy et al. | 2022 | Human distal lung maps and lineage hierarchies reveal a bipotent progenitor | GSE178519 | scRNA-seq | Homo sapiens | Healthy | Organoid | Link |
| Kathiriya et al. | 2022 | Human alveolar Type 2 epithelium transdifferentiates into metaplastic KRT5+ basal cells | GSE150247 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Kathiriya et al. | 2022 | Human alveolar Type 2 epithelium transdifferentiates into metaplastic KRT5+ basal cells | GSE150068 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) | Organoid | Link |
| Sauler et al. | 2022 | Characterization of the COPD alveolar niche using single-cell RNA sequencing | GSE136831 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | Lung | Link |
| Sauler et al. | 2022 | Characterization of the COPD alveolar niche using single-cell RNA sequencing | GSE168299 | scRNA-seq | Mus musculus | emphysema(cs expose and ra expose) | Lung | Link |
| Chan et al. | 2021 | Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer | https://data.humantumoratlas.org/publications/msk_sclc_chan_2021?tab=scrna-seq | scRNA-seq | Homo sapiens | SCLC | tumors, regional lymph node metastases, and distant metastases (liver, adrenal gland, axilla, and pleural effusion) | Link |
| Chua et al. | 2020 | COVID-19 severity correlates with airway epithelium–immune cell interactions identified by single-cell analysis | EGAS00001004481 | scRNA-seq | Homo sapiens | COVID-19 | Airway | Link |
| Delorey et al. | 2021 | COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets | GSE171668(All,include bulk heart kidney liver lung) | snRNA-seq | Homo sapiens | COVID-19 | Lung | Link |
| Hong et al. | 2021 | Single-cell Study of Two Rat Models of Pulmonary Arterial Hypertension Reveals Connections to Human Pathobiology and Drug Repositioning. | http://mergeomics.research.idre.ucla.edu/PVDSingleCell/CellBrowser/ | scRNA-seq | Mus musculus | Healthy(lungs of monocrotaline (MCT), Sugen-hypoxia (SuHx), and control rats) | Lung | Link |
| Loske et al. | 2021 | Pre-activated antiviral innate immunity in the upper airways controls early SARS-CoV-2 infection in children | EGAS00001005461 | scRNA-seq | Homo sapiens | SARS-CoV-2 | upper airway | Link |
| Salahudeen et al. | 2020 | Progenitor identification and SARS-CoV-2 infection in human distal lung organoids | GSE106850 | scRNA-seq | Homo sapiens | SARS-CoV-2 | Lung | Link |
| Basil et al. | 2022 | Human distal airways contain a multipotent secretory cell that can regenerate alveoli | GSE130076 | scRNA-seq | Homo sapiens | Healthy | Distal lung epithelium | Link |
| Basil et al. | 2022 | Human distal airways contain a multipotent secretory cell that can regenerate alveoli | GSE168191 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | peripheral lung tissue , Proximal airway epithelium | Link |
| García et al. | 2019 | Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures | GSE121600 | scRNA-seq | Homo sapiens | Healthy | Airway epithelial | Link |
| García et al. | 2019 | Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures | GSE121600 | scRNA-seq | Mus musculus | Healthy | Airway epithelial | Link |
| Jiang et al. | 2022 | VEGF receptor 2 (KDR) protects airways from mucus metaplasia through a Sox9 dependent pathway | GSE171571 | scRNA-seq | Mus musculus | Healthy | Epithelium | Link |
| Ahn et al. | 2021 | Nasal ciliated cells are primary targets for SARS-CoV-2 replication in the early stage of COVID-19 | GSE155113 | scRNA-seq | Homo sapiens | COVID-19 | nasal cavity | Link |
| Ahn et al. | 2021 | Nasal ciliated cells are primary targets for SARS-CoV-2 replication in the early stage of COVID-19 | GSE171488 | scRNA-seq | Homo sapiens | Healthy | Nasopharynx | Link |
| Ahn et al. | 2021 | Nasal ciliated cells are primary targets for SARS-CoV-2 replication in the early stage of COVID-19 | GSE164547 | scRNA-seq | Homo sapiens | COVID-19 | Nasopharynx | Link |
| Duclos et al. | 2019 | Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution | GSE131391 | scRNA-seq | Homo sapiens | Healthy | right mainstem bronchus | Link |
| Magaletta et al. | 2022 | Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development | GSE182135;GSE182136 | scRNA-seq | Mus musculus | Healthy | pharyngeal endoderm | Link |
| Zhou et al. | 2022 | Airway basal cells show regionally distinct potential to undergo metaplastic differentiation | GSE134064 | scRNA-seq | Mus musculus | Healthy | Trachea | Link |
| Greaney et al. | 2020 | Platform Effects on Regeneration by Pulmonary Basal Cells as Evaluated by Single-Cell RNA Sequencing | GSE145517 | scRNA-seq | Mus musculus | Healthy | Native rat tracheal epithelium | Link |
| Kiyokawa et al. | 2021 | Airway basal stem cells reutilize the embryonic proliferation regulator, Tgfβ-Id2 axis, for tissue regeneration | GSE152692 | scRNA-seq | Mus musculus | Healthy | Tracheal epithelium | Link |
| Kuwahara et al. | 2020 | Delineating the early transcriptional specification of the mammalian trachea and esophagus | Q6WW7FVB | scRNA-seq | Mus musculus | Healthy | Pharynx,Trachea,Lung | Link |
| Lu et al. | 2020 | Rho/SMAD/mTOR triple inhibition enables long-term expansion of human neonatal tracheal aspirate-derived airway basal cell-like cells | GSE137950 | scRNA-seq | Homo sapiens | dysplasia | Trachea | Link |
| Angelidis et al. | 2019 | An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics | GSE124872 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Cohen et al. | 2018 | Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting | GSE119228 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Zanini et al. | 2023 | Developmental diversity and unique sensitivity to injury of lung endothelial subtypes during postnatal growth | GSE159804 | scRNA-seq | Mus musculus | Healthy | Lung pulmonary endothelium | Link |
| Zepp et al. | 2021 | Genomic, epigenomic, and biophysical cues controlling the emergence of the lung alveolus | GSE149563 | scRNA-seq | Homo sapiens | Healthy | Alveolar | Link |
| Zepp et al. | 2021 | Genomic, epigenomic, and biophysical cues controlling the emergence of the lung alveolus | GSE149563 | scRNA-seq | Mus musculus | Healthy | Alveolar | Link |
| Niethamer et al. | 2020 | Defining the role of pulmonary endothelial cell heterogeneity in the response to acute lung injury | GSE128944 | scRNA-seq | Mus musculus | Influenza A | Alveolar | Link |
| Wu et al. | 2021 | Single-cell profiling of tumor heterogeneity and the microenvironment in advanced non-small cell lung cancer | GSE148071 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Ren et al. | 2021 | COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas | GSE158055 | scRNA-seq | Homo sapiens | COVID-19 | Lung,blood | Link |
| Melms et al. | 2021 | A molecular single-cell lung atlas of lethal COVID-19 | GSE171524 | snRNA-seq | Homo sapiens | COVID-19 | Lung | Link |
| Silvin et al. | 2020 | Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19 | GSE145926 | scRNA-seq | Homo sapiens | COVID-19 | Lung bronchoalveolar lavage fluid | Link |
| Plasschaert et al. | 2018 | A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte | GSE102580 | scRNA-seq | Mus musculus | Healthy | Trachea | Link |
| Plasschaert et al. | 2018 | A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte | GSE102580 | scRNA-seq | Homo sapiens | Healthy | Trachea | Link |
| Montoro et al. | 2018 | A revised airway epithelial hierarchy includes CFTR-expressing ionocytes | GSE103354 | scRNA-seq | Mus musculus | Healthy | Trachea | Link |
| Montoro et al. | 2018 | A revised airway epithelial hierarchy includes CFTR-expressing ionocytes | GSE103354 | scRNA-seq | Mus musculus | Healthy | Trachea | Link |
| Kim et al. | 2020 | Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma | GSE131907 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Lim et al. | 2023 | Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease | E-MTAB-11435 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| He et al. | 2022 | A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates | E-MTAB-11278 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Yoshida et al. | 2022 | Local and systemic responses to SARS-CoV-2 infection in children and adults | GSE168215 | scRNA-seq | Homo sapiens | COVID-19 | Bronchi | Link |
| Wyler et al. | 2020 | Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention | GSE148729 | scRNA-seq | Homo sapiens | SARS-CoV-2 | Lung epithelial | Link |
| Lukassen et al. | 2020 | SARS‐CoV‐2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells | 7r2cwbw44m | snRNA-seq | Homo sapiens | adenocarcinoma | Unclassified | Link |
| Lukassen et al. | 2020 | SARS‐CoV‐2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells | 7r2cwbw44m | scRNA-seq | Homo sapiens | SARS-CoV-2 | Unclassified | Link |
| Madissoon et al. | 2022 | A spatially resolved atlas of the human lung characterizes a gland-associated immune niche | nan | scRNA-seq,snRNA-seq | Homo sapiens | Healthy | Immune ; Epithelia ; Stroma ; Vascular | Link |
| Miller et al. | 2020 | In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution | E-MTAB-8221 | scRNA-seq | Homo sapiens | Healthy | Unclassified | Link |
| Miller et al. | 2020 | In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution | E-MTAB-8221 | scRNA-seq | Homo sapiens | Healthy | Scraped tracheal epithelial, small airways, distal lung | Link |
| Szabo et al. | 2021 | Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19 | Unclassified | scRNA-seq | Homo sapiens | COVID-19 | Airway | Link |
| Tsukui et al. | 2020 | Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis | GSE132771 | scRNA-seq | Mus musculus | Lung fibrosis | Unclassified | Link |
| Tsukui et al. | 2020 | Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis | GSE132771 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) , Scleroderma | Unclassified | Link |
| Tsukui et al. | 2020 | Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis | GSE147066 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) | Lung mesenchyme | Link |
| Habermann et al. | 2020 | Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis | GSE135893 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) , chronic hypersensitivity pneumonitis , nonspecific interstitial pneumonia , sarcoidosis , unclassifiable ILD , nonfibrotic controls | Lung epithelial ; Lung endothelial ; Lung mesenchymal ; Lung immune | Link |
| Herriges et al. | 2023 | Durable alveolar engraftment of PSC-derived lung epithelial cells into immunocompetent mice. | GSE200886 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Adams et al. | 2020 | Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis | GSE136831 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) ,Chronic obstructive pulmoriary disease(COPD) | Lung | Link |
| He et al. | 2022 | Single-Cell RNA Sequencing Unravels Distinct Tumor Microenvironment of Different Components of Lung Adenocarcinoma Featured as Mixed Ground-Glass Opacity | GSE203360 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | solid components and ground-glass like components | Link |
| Song et al. | 2019 | Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq | GSE117570 | scRNA-seq | Homo sapiens | NSCLC | Lung | Link |
| Dost et al. | 2020 | Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells | GSE149655 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Dost et al. | 2020 | Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells | GSE149909 | scRNA-seq | Mus musculus | Ad5CMV(cre) infected | epithelial organoid cells | Link |
| Laughney et al. | 2020 | Regenerative lineages and immune-mediated pruning in lung cancer metastasis | GSE123902 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Laughney et al. | 2020 | Regenerative lineages and immune-mediated pruning in lung cancer metastasis | GSE123903 | scRNA-seq | Mus musculus | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Kaiser et al. | 2023 | p53 governs an AT1 differentiation programme in lung cancer suppression. | GSE231681 | scRNA-seq | Mus musculus | Lung cancer | Lung | Link |
| Liu et al. | 2021 | Categorization of lung mesenchymal cells in development and fibrosis | GSE156329 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Liu et al. | 2021 | Categorization of lung mesenchymal cells in development and fibrosis | GSE157654 | scRNA-seq | Mus musculus | Healthy | Lung, Trachea | Link |
| Liu et al. | 2021 | Categorization of lung mesenchymal cells in development and fibrosis | GSE157379 | scRNA-seq | Mus musculus | Idiopathic pulmonary fibrosis (IPF) | Mesenchymal | Link |
| Liu et al. | 2021 | Categorization of lung mesenchymal cells in development and fibrosis | GSE157377 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Liu et al. | 2021 | Categorization of lung mesenchymal cells in development and fibrosis | GSE157376 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) | Mesenchymal | Link |
| Wu et al. | 2023 | Single cell RNA sequencing unravels mechanisms underlying senescence-like phenotypes of alveolar macrophages. | GSE205982 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Valenzi et al. | 2020 | Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease | GSE128169 | scRNA-seq | Homo sapiens | scleroderma | Lung | Link |
| Zhang et al. | 2023 | Mast cell marker gene signature: prognosis and immunotherapy response prediction in lung adenocarcinoma through integrated scRNA-seq and bulk RNA-seq. | GSE150938 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Jirmo et al. | 2023 | Single cell RNA sequencing reveals distinct clusters of Irf8-expressing pulmonary conventional dendritic cells. | GSE195899 | scRNA-seq | Mus musculus | asthma, multiplexed sample (Alum, OVA, Tolerization protocol) | Lung | Link |
| Fan et al. | 2023 | Elevated Mast Cell Abundance Is Associated with Enrichment of CCR2+ Cytotoxic T Cells and Favorable Prognosis in Lung Adenocarcinoma. | GSE127465 | scRNA-seq | Homo sapiens | LA、SSC | Lung | Link |
| Fan et al. | 2023 | Elevated Mast Cell Abundance Is Associated with Enrichment of CCR2+ Cytotoxic T Cells and Favorable Prognosis in Lung Adenocarcinoma. | GSE127465 | scRNA-seq | Mus musculus | LA | Lung | Link |
| Li et al. | 2023 | Heme oxygenase-1 determines the cell fate of ferroptotic death of alveolar macrophages in COPD. | GSE227691 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | Lung | Link |
| Pai et al. | 2023 | Lineage tracing reveals clonal progenitors and long-term persistence of tumor-specific T cells during immune checkpoint blockade. | GSE185206 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Parimon et al. | 2019 | Syndecan-1 promotes lung fibrosis by regulating epithelial reprogramming through extracellular vesicles | GSE131800 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Xie et al. | 2018 | Single-Cell Deconvolution of Fibroblast Heterogeneity in Mouse Pulmonary Fibrosis | GSE104154 | scRNA-seq | Mus musculus | Idiopathic pulmonary fibrosis (IPF) | Mesenchymal | Link |
| Liu et al. | 2019 | Lung regeneration by multipotent stem cells residing at the bronchioalveolar-duct junction | GSE118891 | scRNA-seq | Mus musculus | lung regeneration | Lung | Link |
| Valenzi et al. | 2023 | Single-nucleus chromatin accessibility identifies a critical role for TWIST1 in idiopathic pulmonary fibrosis myofibroblast activity. | GSE214085 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) | Lung | Link |
| Glasner et al. | 2023 | Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs new combination cancer therapy strategies. | GSE202159 | scRNA-seq | Mus musculus | Lung tumor and lung injury | Lung | Link |
| Lambrechts et al. | 2018 | Phenotype molding of stromal cells in the lung tumor microenvironment | E-MTAB-6149 | scRNA-seq | Homo sapiens | lung carcinoma | Lung | Link |
| Han et al. | 2020 | Construction of a human cell landscape at single-cell level | GSE134355 | scRNA-seq | Homo sapiens | Healthy | right lobes | Link |
| Han et al. | 2020 | Construction of a human cell landscape at single-cell level | GSE134355 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Szabo et al. | 2019 | Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease | GSE126030 | scRNA-seq | Homo sapiens | Healthy | Immune | Link |
| Madissoon et al. | 2019 | scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation | https://prod.data.humancellatlas.org/explore/projects/c4077b3c-5c98-4d26-a614-246d12c2e5d7 | scRNA-seq | Homo sapiens | Healthy | Lung parenchyma (lower left lobe) | Link |
| Mould et al. | 2021 | Airspace Macrophages and Monocytes Exist in Transcriptionally Distinct Subsets in Healthy Adults. | GSE151928 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Consortium et al. | 2022 | The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans. | GSE201333 | scRNA-seq | Homo sapiens | Chronic lung disease | Lung, blood | Link |
| Kyle et al. | 2020 | A molecular cell atlas of the human lung from single-cell RNA sequencing | syn21041850 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Kyle et al. | 2020 | A molecular cell atlas of the human lung from single-cell RNA sequencing | syn21041850 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Kyle et al. | 2020 | A molecular cell atlas of the human lung from single-cell RNA sequencing | https://www.synapse.org/%23!Synapse:syn21041850 小鼠PRJNA632939 人类EGAS00001004344 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Kyle et al. | 2020 | A molecular cell atlas of the human lung from single-cell RNA sequencing | https://www.synapse.org/%23!Synapse:syn21041850 小鼠PRJNA632939 人类EGAS00001004344 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Yu et al. | 2021 | Comprehensive identification of fetal cis-regulatory elements in the human genome by single-cell multi-omics analysis | https://figshare.com/projects/HumanProject/122983 | scRNA-seq | Homo sapiens | Unclassified | Lung | Link |
| Madissoon et al. | 2019 | Lung, spleen and oesophagus tissue remains stable for scRNAseq in cold preservation | 是HCA的一部分 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Raredon et al. | 2019 | Single-cell connectomic analysis of adult mammalian lungs | GSE133747 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Raredon et al. | 2019 | Single-cell connectomic analysis of adult mammalian lungs | GSE133747 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Marie Deprez et al. | 2020 | A Single-Cell Atlas of the Human Healthy Airways | EGAS00001004082 | scRNA-seq | Homo sapiens | Healthy | Airway | Link |
| Okuda et al. | 2020 | Secretory Cells Dominate Airway CFTR Expression and Function in Human Airway Superficial Epithelia. | GSE160673 | scRNA-seq | Homo sapiens | Healthy | Bronchi, Bronchiole | Link |
| Liu et al. | 2021 | Delineating spatiotemporal and hierarchical development of human fetal innate lymphoid cells | GSE163587 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Conchola et al. | 2022 | Regionally distinct progenitor cells in the lower airway give rise to neuroendocrine and multiciliated cells in the developing human lung | E-MTAB-8221 | scRNA-seq | Homo sapiens | Healthy | distal,airway,trachea | Link |
| Jackson et al. | 2020 | Single-Cell and Population Transcriptomics Reveal Pan-epithelial Remodeling in Type 2-High Asthma | GSE145013 | scRNA-seq | Homo sapiens | asthma | Lung | Link |
| Carraro et al. | 2020 | Single-Cell Reconstruction of Human Basal Cell Diversity in Normal and Idiopathic Pulmonary Fibrosis Lungs | GSE143706 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) , Scleroderma | Lung | Link |
| Li et al. | 2022 | DJ-1 governs airway progenitor cell/eosinophil interactions to promote allergic inflammation | GSE203079 | scRNA-seq | Mus musculus | allergic lung inflammation | Lung | Link |
| Conde et al. | 2022 | Cross-tissue immune cell analysis reveals tissue-specific features in humans | E-MTAB-11536 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Engler et al. | 2020 | Airway-Associated Macrophages in Homeostasis and Repair | GSE152501 | scRNA-seq | Mus musculus | Lung damage | Tracheal epithelium | Link |
| Vieira Braga et al. | 2019 | A cellular census of human lungs identifies novel cell states in health and in asthma | GSE130148 | scRNA-seq | Homo sapiens | Healthy | upper lobe, main bronchus | Link |
| Waise et al. | 2019 | An optimised tissue disaggregation and data processing pipeline for characterising fibroblast phenotypes using single-cell RNA sequencing | GSE126111 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Zuo et al. | 2020 | Cell-specific expression of lung disease risk-related genes in the human small airway epithelium | GSE123405 | scRNA-seq | Homo sapiens | healthy nonsmokers and asymptomatic smokers | Airway | Link |
| Schupp et al. | 2021 | Integrated Single-Cell Atlas of Endothelial Cells of the Human Lung | GSE164829 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Eraslan et al. | 2021 | Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function | dbGaP: phs000424.v9 | snRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Mayr et al. | 2021 | Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers | 部分数据是蛋白质数据, 修改了下载链接 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD), lung squamous cell carcinoma(LUSC) | Lung | Link |
| Leader et al. | 2021 | Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification | nan | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD), lung squamous cell carcinoma(LUSC) | Lung | Link |
| Ursu et al. | 2022 | Author Correction: Massively parallel phenotyping of coding variants in cancer with Perturb-seq | GSE161824 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Jaeger et al. | 2022 | Airway basal cells show a dedifferentiated KRT17highPhenotype and promote fibrosis in idiopathic pulmonary fibrosis | GSE141939 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) | Lung | Link |
| Consortium et al. | 2018 | Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris | GSE109774 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Consortium et al. | 2018 | Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris | GSE109774 | scRNA-seq | Mus musculus | Healthy | Trachea | Link |
| Prescott et al. | 2023 | A comparative study of in vitro air-liquid interface culture models of the human airway epithelium evaluating cellular heterogeneity and gene expression at single cell resolution. | GSE225765 | scRNA-seq | Homo sapiens | Healthy | Airway | Link |
| Hönzke et al. | 2022 | Human lungs show limited permissiveness for SARS-CoV-2 due to scarce ACE2 levels but virus-induced expansion of inflammatory macrophages | GSE198864 | snRNA-seq | Homo sapiens | COVID-19 | Lung | Link |
| Zhu et al. | 2022 | Delineating the dynamic evolution from preneoplasia to invasive lung adenocarcinoma by integrating single-cell RNA sequencing and spatial transcriptomics. | GSE189357 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Guo et al. | 2018 | Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing | GSE99254 | scRNA-seq | Homo sapiens | NSCLC | Lung | Link |
| Marjanovic et al. | 2020 | Emergence of a High-Plasticity Cell State during Lung Cancer Evolution | GSE152607 文件少了, 其实有很多 | scRNA-seq | Mus musculus | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Liu et al. | 2021 | Tumour heterogeneity and intercellular networks of nasopharyngeal carcinoma at single cell resolution | GSE162025 | scRNA-seq | Homo sapiens | nasopharyngeal carcinom | Nasopharynx | Link |
| He et al. | 2018 | Single-cell RNA sequencing of mouse brain and lung vascular and vessel-associated cell types | GSE99235 | scRNA-seq | Mus musculus | NSCLC | Lung vascular | Link |
| Huang et al. | 2022 | Single-cell transcriptomics highlights immunological dysregulations of monocytes in the pathobiology of COPD. | GSE171541 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | Lung | Link |
| Chandrasekaran et al. | 2022 | CXCL12 defines lung endothelial heterogeneity and promotes distal vascular growth. | GSE202132 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Verma et al. | 2022 | IFN-γ transforms the transcriptomic landscape and triggers myeloid cell hyperresponsiveness to cause lethal lung injury. | GSE212402 | scRNA-seq | Mus musculus | ARDS | Lung | Link |
| Smirnova et al. | 2022 | Single-cell transcriptome mapping identifies a local, innate B cell population driving chronic rejection after lung transplantation. | GSE166386 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Zhong et al. | 2022 | scRNA-seq reveals ATPIF1 activity in control of T cell antitumor activity. | GSE158278 | scRNA-seq | Mus musculus | B16 melanoma tumor | Lung | Link |
| Hoffmann et al. | 2022 | Human alveolar progenitors generate dual lineage bronchioalveolar organoids. | GSE197949 | scRNA-seq | Mus musculus | Healthy | HT280+ cells | Link |
| Heo et al. | 2022 | DNA methylome and single-cell transcriptome analyses reveal CDA as a potential druggable target for ALK inhibitor-resistant lung cancer therapy. | GSE139388 | scRNA-seq | Homo sapiens | NSCLC | Lung | Link |
| Radtke et al. | 2022 | Th2 single-cell heterogeneity and clonal distribution at distant sites in helminth-infected mice. | GSE181342 | scRNA-seq | Mus musculus | Nippostrongylus brasiliensis infection | Immune | Link |
| Schuurman et al. | 2021 | Integrated single-cell analysis unveils diverging immune features of COVID-19, influenza, and other community-acquired pneumonia | GSE164948 | scRNA-seq | Homo sapiens | COVID-19 | Lung | Link |
| Sefik et al. | 2022 | Inflammasome activation in infected macrophages drives COVID-19 pathology | GSE199272 | scRNA-seq | Homo sapiens;Mus musculus | COVID-19 | Lung | Link |
| Caporarello et al. | 2022 | Dysfunctional ERG signaling drives pulmonary vascular aging and persistent fibrosis. | GSE187333 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Khan et al. | 2022 | Alveolar Basal Cells Differentiate towards Secretory Epithelial- and Aberrant Basaloid-like Cells In Vitro. | GSE198153 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) | Alveolar | Link |
| Paranjapye et al. | 2022 | Cell function and identity revealed by comparative scRNA-seq analysis in human nasal, bronchial and epididymis epithelia. | GSE191061 | scRNA-seq | Homo sapiens | Cystic Fibrosis | Epithelium | Link |
| Zhang et al. | 2022 | Single-cell transcriptomic profiling of lung endothelial cells identifies dynamic inflammatory and regenerative subpopulations. | GSE148499 | scRNA-seq | Mus musculus | Lung damage | Endothelial | Link |
| Zhang et al. | 2022 | Single-cell transcriptomic profiling of lung endothelial cells identifies dynamic inflammatory and regenerative subpopulations. | GSE201541 | scRNA-seq | Mus musculus | H1N1 | Lung | Link |
| Quinn et al. | 2021 | Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts | GSE161363 | scRNA-seq | Mus musculus | LA | Lung | Link |
| Grant et al. | 2021 | Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia | GSE155249 | scRNA-seq | Homo sapiens | COVID-19 | Lung | Link |
| Khan et al. | 2022 | Basal-Like Cell-Conditioned Medium Exerts Anti-Fibrotic Effects <i>In Vitro</i> and <i>In Vivo</i>. | GSE145439 | scRNA-seq | Homo sapiens | Idiopathic pulmonary fibrosis (IPF) | Basal | Link |
| He et al. | 2020 | Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs. | GSE159929 | scRNA-seq | Homo sapiens | Healthy | Trachea | Link |
| Vanderheiden et al. | 2022 | CCR2 Signaling Restricts SARS-CoV-2 Infection. | GSE186360 | scRNA-seq | Mus musculus | COVID-19 | Lung | Link |
| Oliva et al. | 2022 | Aging-related olfactory loss is associated with olfactory stem cell transcriptional alterations in humans. | GSE184117 | scRNA-seq | Homo sapiens | Healthy | olfactory epithelium | Link |
| Huggins et al. | 2022 | Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset. | GSE164302 | scRNA-seq | Mus musculus | Primary tumor | Lung | Link |
| Gao et al. | 2022 | IFN-γ is essential for alveolar macrophage-driven pulmonary inflammation in macrophage activation syndrome. | GSE169325 | scRNA-seq | Mus musculus | MAS | Lung | Link |
| Liao et al. | 2020 | Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 | GSE145926 | scRNA-seq | Homo sapiens | COVID-19 | Lung: BALF | Link |
| Bost et al. | 2021 | Deciphering the state of immune silence in fatal COVID-19 patients | GSE157344 | scRNA-seq | Homo sapiens | COVID-19 | BLAF, Lung | Link |
| Sarma et al. | 2021 | Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS | GSE163426 | scRNA-seq | Homo sapiens | COVID-ARDS | Lung | Link |
| Vanderheiden et al. | 2022 | CCR2-dependent monocyte-derived cells restrict SARS-CoV-2 infection. | GSE186360 | scRNA-seq | Mus musculus | COVID-19 | Lung | Link |
| van der Linden et al. | 2021 | Olfactory Stimulation Regulates the Birth of Neurons That Express Specific Odorant Receptors. | GSE157119 | scRNA-seq | Mus musculus | Healthy | Epithelium | Link |
| Tan et al. | 2021 | The role of the NMD factor UPF3B in olfactory sensory neurons. | GSE146043 | scRNA-seq | Mus musculus | Healthy | Epithelium | Link |
| Zeppilli et al. | 2021 | Molecular characterization of projection neuron subtypes in the mouse olfactory bulb. | GSE162654 | snRNA-seq | Mus musculus | Healthy | olfactory bulb | Link |
| Choi et al. | 2020 | Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration | GSE144468 | scRNA-seq | Mus musculus | Unclassified | Lung,blood | Link |
| Little et al. | 2021 | Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo. | GSE158192 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Reyfman et al. | 2019 | Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis | GSE122960 | scRNA-seq | Homo sapiens | Systemic sclerosis_associated ILD; IPF; Hypersensitivity pneumonitis; Myositis-associated ILD | Lung | Link |
| Wang et al. | 2018 | Expansion of hedgehog disrupts mesenchymal identity and induces emphysema phenotype | GSE102592 | scRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Lamers et al. | 2021 | An organoid-derived bronchioalveolar model for SARS-CoV-2 infection of human alveolar type II-like cells. | GSE161934 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Wang et al. | 2018 | Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate | GSE106960 | scRNA-seq | Mus musculus | Healthy | AT1,AT2 | Link |
| Schuler et al. | 2021 | Age-determined expression of priming protease TMPRSS2 and localization of SARS-CoV-2 in lung epithelium. | GSE160876 | scRNA-seq | Mus musculus | Healthy | nan | Link |
| Daniloski et al. | 2021 | Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells. | GSE159519 | scRNA-seq | Homo sapiens | Lung cancer | Lung | Link |
| Koenitzer et al. | 2021 | Single-Nucleus RNA-Sequencing Profiling of Mouse Lung. Reduced Dissociation Bias and Improved Rare Cell-Type Detection Compared with Single-Cell RNA Sequencing. | GSE145998 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Koenitzer et al. | 2021 | Single-Nucleus RNA-Sequencing Profiling of Mouse Lung. Reduced Dissociation Bias and Improved Rare Cell-Type Detection Compared with Single-Cell RNA Sequencing. | GSE145998 | snRNA-seq | Mus musculus | Healthy | Lung | Link |
| Hsu et al. | 2021 | Single-cell RNA-seq Analysis Reveals That Prenatal Arsenic Exposure Results in Long-term, Adverse Effects on Immune Gene Expression in Response to Influenza A Infection. | GSE142047 | scRNA-seq | Mus musculus | Influenza A | Lung | Link |
| He et al. | 2020 | Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients | GSE147143 | scRNA-seq | Homo sapiens | COVID-19 | Lung: BALF | Link |
| Gao et al. | 2021 | Human nasal wash RNA-Seq reveals distinct cell-specific innate immune responses in influenza versus SARS-CoV-2. | GSE176269 | scRNA-seq | Homo sapiens | COVID-19 and Flu | Lung | Link |
| Nilsson-Payant et al. | 2021 | The NF-κB Transcriptional Footprint Is Essential for SARS-CoV-2 Replication. | GSE184536 | scRNA-seq | Homo sapiens | SARS-CoV-2 | Lung | Link |
| Zhao et al. | 2021 | Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients | GSE167118 仅取出单细胞测序部分数据 | scRNA-seq | Homo sapiens | COVID-19 and Bacterial pneumonia | Lung: BALF , Blood | Link |
| Fiege et al. | 2020 | Single cell resolution of SARS-CoV-2 tropism, antiviral responses, and susceptibility to therapies in primary human airway epithelium | GSE157526 | scRNA-seq | Homo sapiens | SARS-CoV-2 | Lung | Link |
| Wyler et al. | 2021 | Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy. | GSE148729 | scRNA-seq | Homo sapiens | SARS-CoV-2 | Lung cell line | Link |
| Caushi et al. | 2021 | Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers. | GSE173351, 子类GSE176021为scRNA-seq数据 | scRNA-seq | Homo sapiens | NSCLC | nan | Link |
| Ziegler et al. | 2020 | SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues. | GSE148829 | scRNA-seq | Homo sapiens | SARS-CoV-2 | Lung | Link |
| Wang et al. | 2020 | Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection. | GSE118773 | scRNA-seq | Homo sapiens | Influenza A | Bronchi,Lung | Link |
| Obraztsova et al. | 2020 | mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline. | GSE139819 | scRNA-seq | Homo sapiens | LAM | Lung | Link |
| Paris et al. | 2020 | STAT3-BDNF-TrkB signalling promotes alveolar epithelial regeneration after lung injury. | GSE132533 | scRNA-seq | Mus musculus | Healthy | Mesenchymal | Link |
| Bharat et al. | 2020 | Lung transplantation for patients with severe COVID-19. | GSE158127 | scRNA-seq | Homo sapiens | COVID-19 | Immune, Epithelial, Stromal, Endothelial | Link |
| Riemondy et al. | 2020 | Single cell RNA sequencing identifies TGFβ as a key regenerative cue following LPS-induced lung injury. | GSE113049 | scRNA-seq | Mus musculus | Lung damage | Alveolar | Link |
| Ramos et al. | 2020 | Innate Immune Response to Influenza Virus at Single-Cell Resolution in Human Epithelial Cells Revealed Paracrine Induction of Interferon Lambda 1. | GSE122031 | scRNA-seq | Homo sapiens | H1N1 | Lung | Link |
| Aran et al. | 2019 | Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. | GSE111664 | scRNA-seq | Mus musculus | Lung damage | Lung | Link |
| Steuerman et al. | 2019 | Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing. | GSE107947 | scRNA-seq | Mus musculus | Influenza A | Lung | Link |
| Russell et al. | 2019 | Extreme heterogeneity of influenza virus infection in single cells. | GSE108041 | scRNA-seq | Homo sapiens | Influenza A | Lung | Link |
| Zepp et al. | 2017 | Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung. | GSE99714 | scRNA-seq | Mus musculus | Lung damage | Lung | Link |
| Fischer et al. | 2021 | Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through 'reverse phenotyping'. | GSE171037 | scRNA-seq | Homo sapiens | COVID-19 | Trachea, PBMC | Link |
| Wang et al. | 2020 | Single Nucleus Multiomic Profiling Reveals Age-Dynamic Regulation of Host Genes Associated with SARS-CoV-2 Infection | GSE161382 | snRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Ulrich et al. | 2022 | Allergic airway recall responses require IL-9 from resident memory CD4<sup>+</sup> T cells. | GSE190795 | scRNA-seq | Mus musculus | allergic lung inflammation | Lung | Link |
| Nguyen et al. | 2022 | Immunophenotyping of Acute Inflammatory Exacerbations of Lung Injury Driven by Mutant Surfactant Protein-C: A Role for Inflammatory Eosinophils. | GSE196657 | scRNA-seq | Mus musculus | Lung damage | Lung | Link |
| Xu et al. | 2023 | Integrative analysis of spatial transcriptome with single-cell transcriptome and single-cell epigenome in mouse lungs after immunization. | GSE190225 | scRNA-seq | Mus musculus | inoculated with heat-killed K. pneumoniae | Lung | Link |
| Nakayama T et al. | 2021 | Inflammatory molecular endotypes of nasal polyps derived from White and Japanese populations | GSE179269 | scRNA-seq | Homo sapiens | Nasal polyps | Nose | Link |
| Garrido-Martin et al. | 2020 | M1hot tumor-associated macrophages boost tissue-resident memory T cells infiltration and survival in human lung cancer | GSE116948 | scRNA-seq | Homo sapiens | NSCLC | Lung | Link |
| Ma et al. | 2021 | Single-cell analysis pinpoints distinct populations of cytotoxic CD4+ T cells and an IL-10+CD109+ TH2 cell population in nasal polyps | GSE179292 | scRNA-seq | Homo sapiens | Nasal polyps | Nose | Link |
| Wang et al. | 2023 | Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir | GSE196638 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | Lung (distal) | Link |
| Cassandras et al. | 2023 | Gli1+ mesenchymal stromal cells form a pathological niche to promote airway progenitor metaplasia in the fibrotic lung | GSE140032 | scRNA-seq | Mus musculus | Fibrotic injury | Lung | Link |
| Watanabe et al. | 2022 | Anomalous Epithelial Variations and Ectopic Inflammatory Response in Chronic Obstructive Pulmonary Disease | GSE173896 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | Lung | Link |
| Liégeois et al. | 2022 | Airway Macrophages Encompass Transcriptionally and Functionally Distinct Subsets Altered by Smoking | GSE183974 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | Lung | Link |
| Moghbeli et al. | 2021 | β-Agonist exposure preferentially impacts lung macrophage cyclic AMP-related gene expression in asthma and asthma COPD overlap syndrome | 14782377.v1 | scRNA-seq | Homo sapiens | ACOS(asthma+COPD) | Lung | Link |
| Li et al. | 2021 | Single cell RNA sequencing identifies IGFBP5 and QKI as ciliated epithelial cell genes associated with severe COPD | GSE167265 | scRNA-seq | Homo sapiens | Chronic obstructive pulmoriary disease(COPD) | Lung | Link |
| LaMarche et al. | 2024 | An IL-4 signalling axis in bone marrow drives pro-tumorigenic myelopoiesis | GSE245236 | scRNA-seq | Mus musculus | NSCLC | Lung | Link |
| Xu et al. | 2020 | Persistent viral activity, cytokine storm, and lung fibrosis in a case of severe COVID-19 | GSE149878 | scRNA-seq | Homo sapiens | COVID-19 | Lung | Link |
| Wang et al. | 2020 | Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes | GSE161382 | snRNA-seq | Homo sapiens | Healthy | Lung | Link |
| Ualiyeva et al. | 2024 | A nasal cell atlas reveals heterogeneity of tuft cells and their role in directing olfactory stem cell proliferation | GSE245074 | scRNA-seq | Mus musculus | Alternaria | Nose | Link |
| Sountoulidis et al. | 2023 | A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung | GSE215895 | scRNA-seq | Homo sapiens | Healthy | right lobes | Link |
| Armstead et al. | 2023 | Application of single cell multiomics points to changes in chromatin accessibility near calcitonin receptor like receptor and a possible role for adrenomedullin in the post-shock lung. | dm01-zr98 | scRNA-seq | Mus musculus | ARDS | Lung | Link |
| Ziegler et al. | 2023 | Severe COVID-19 is associated with fungal colonization of the nasopharynx and potent induction of IL-17 responses in the nasal epithelium. | SCP1289 | scRNA-seq | Homo sapiens | COVID-19 | Nasopharynx | Link |
| Li et al. | 2022 | ScRNA-seq expression of <i>IFI27</i> and <i>APOC2</i> identifies four alveolar macrophage superclusters in healthy BALF. | GSE193782 | scRNA-seq | Homo sapiens | Cystic Fibrosis | Alveolar（BALF） | Link |
| Bischoff et al. | 2021 | Single-cell RNA sequencing reveals distinct tumor microenvironmental patterns in lung adenocarcinoma | https://codeocean.com/capsule/8321305/tree/v1 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Li et al. | 2023 | DOT1L regulates lung developmental epithelial cell fate and adult alveolar stem cell differentiation after acute injury. | GSE210800 | scRNA-seq | Mus musculus | Influenza A | Lung | Link |
| Carraro et al. | 2021 | Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition | GSE150674 | scRNA-seq | Homo sapiens | Cystic Fibrosis | Airway Epithelium , Airway Submucosal Glands | Link |
| Carraro et al. | 2021 | Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition | GSE150674 | scRNA-seq | Homo sapiens | Cystic Fibrosis | Air Liquid Interface Culture | Link |
| Maroni et al. | 2021 | Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer | GSE136246 | scRNA-seq | Homo sapiens | NSCLC | Lung | Link |
| Maroni et al. | 2021 | Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer | GSE136246 | scRNA-seq | Mus musculus | Lung cancer | Lung nodule | Link |
| Gamage et al. | 2023 | Human Nasal Epithelial Cells Sustain Persistent SARS-CoV-2 Infection <i>In Vitro</i>, despite Eliciting a Prolonged Antiviral Response. | GSE182475 | scRNA-seq | Homo sapiens | SARS-CoV-2 | Nose | Link |
| Choi et al. | 2020 | Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration | GSE145031 | scRNA-seq | Mus musculus | Unclassified | Lung,blood | Link |
| Zhang et al. | 2021 | Multiomics analysis reveals a distinct response mechanism in multiple primary lung adenocarcinoma after neoadjuvant immunotherapy | GSE146100 | scRNA-seq | Homo sapiens | Lung cancer | in a solid nodule | Link |
| Chen et al. | 2023 | Identification of RAC1 in promoting brain metastasis of lung adenocarcinoma using single-cell transcriptome sequencing. | GSE198291 | scRNA-seq | Homo sapiens | Lung Adenocarcinoma(LUAD) | Lung | Link |
| Tibbitt et al. | 2019 | Single-Cell RNA Sequencing of the T Helper Cell Response to House Dust Mites Defines a Distinct Gene Expression Signature in Airway Th2 Cells | GSE131935 | scRNA-seq | Mus musculus | asthma | Nose,Airway,Lung | Link |
| Negretti et al. | 2021 | A single-cell atlas of mouse lung development | GSE165063 | scRNA-seq | Mus musculus | Healthy | Lung | Link |
| Zuani et al. | 2024 | Single-cell and spatial transcriptomics analysis of non-small cell lung cancer | E-MTAB-13526 | nan | nan | nan | nan | Link |
| Kasmani et al. | 2023 | A spatial sequencing atlas of age-induced changes in the lung during influenza infection | GSE202325 | nan | nan | nan | nan | Link |
| Wang et al. | 2023 | Multidirectional characterization of cellular composition and spatial architecture in human multiple primary lung cancers | GSE200972 | scRNA-seq | Homo sapiens | Multiple primary lung cancers (MPLC) | nan | Link |
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